IT 7th sem IT 723 Bioinformatics Syllabus RGTU/RGPV Information Technology Syllabus

IT 723 Bioinformatics SYLLABUS 

 RGTU/RGPV IT 7th sem Bioinformatics SYLLABUS

Information Technology IT 7th Semester Syllabus,

 

IT 723 Bioinformatics Course Contents:

Unit I: Introduction to bioinformatics: Definition and History of Bioinformatics, Application and research of bioinformatics, finding Bioinformatics data online Bioinformatics, private and future data sources,  Meta data Summary and reference systems.

Unit II: Bioinformatics Database: Characteristics and categories of Bioinformatics database,  Navigating databases, Information retrieval Systems, Sequence database Nucleotide(primary and Secondary), Protein sequence, Structure Databases: File Formats, Protein Structure, PDB, MMDB, CATH, Other Database Enzyme, MEROPS, BRENDA, Pathway databases

Unit III: Bioinformatics Tools: Need for tools, Industry Trends, Data Mining Tools, Data Submission tools: Nucleotide Sequence, protein Submission tools, Data Analysis tools: Nucleotide Sequence,  protein Sequence, Prediction Tools: Phylogenetic trees, Gene prediction, Protein Structure and Function prediction, Modeling Tools: 2D and 3D Protein Modeling.

Unit IV: Bioinformatics Algorithms: Classification of Algorithms, Biological Algorithm, Sequence Comparison Algorithm, Substitution Matrices Algorithms, Sequence Alignment Algorithm ,Gene Prediction Algorithm.

Unit V: Bioinformatics Software: Local Alignment Search Tool (BLAST),Purpose of BLAST,BLAST Analysis, Purpose of BLAST II, Scoring Metrics, PAM, BLOSUM, Working of BLAST. Introduction of HMMER, Practical example of HMMER.

References:-
 Orpita Bosu and Simminder Kaur Thukral, ”Bioinformatics Databases,Tools and Algorithms”, Oxford University Press 2007.
 Harshawardhan P.bal, “Bioinformatics Principle and Applications”, TMH.
 Lesk, A.M.2002, “Introduction to Bioinformatics”, Oxford University Press.
 Rastogi, S.C. ,Mendiratta N, “Bioinformatics Concepts,Skill & Applications”, CBS Publishers.
 Claverie, J.M and Notredame C, “Bioinformatics for Dummies”, Wiley Editior.

IT 7th sem IT 724 Unix & Shell Programing Syllabus RGTU/RGPV Information Technology Syllabus

IT 724 Unix & Shell Programing SYLLABUS 

 RGTU/RGPV Unix & Shell Programing SYLLABUS

Information Technology IT 7th Semester Syllabus,

IT 724 Unix & Shell Programing Course Contents:

UNIT–I
General Overview of the System: System structure, user perspective, O/S services assumption about Hardware The Kernel and buffer cache architecture of Unix O/S, System concepts, Kernel data Structure, System administration, Buffer headers, Structure of the buffer pool, Scenarios for retrieval of the buffer, Reading and writing disk block, Advantage and disadvantage of buffer cache.

UNIT–II
Internal Representation of Files: Inodes, Structure of regular, Directories conversions of a path name to an inode, Super block, Inode assignment to a new file, Allocation of disk blocks, Open read write file and record close, File creation, Operation of special files change directory and change root, change
owner and change mode. STAT and FSTAT, PIPES mounting and unmounting files system, Link Unlink

UNIT–III
Structures of Processes and process control: Process states and transitions layout of system memory, the context of a process, manipulation of process address space, Sleep process creation/termination. The user Id of a process, changing the size of a process. Killing process with signals, job control, scheduling commands: AT and BATCH,TIME,CORN.

UNIT-IV
Introduction to shell scripts: shell Bourne shell, C shell, Unix commands, permissions, editors, grep family, shell variables, scripts, metacharacters and environment, if and case statements, for while and until loops. Shell programming.

UNIT-V
Introduction of Awk and perl Programming: Awk pattern scanning , BEGIN and END patterns, Awk arithmetic and variables, and operators, functions, perl; the chop() function, variable and operators.Networking tools:Resolving IP addressing, TELNET, FTP, Socket programming, introduction of Linux structure .

References:-
1. M.J. Bach “Design of UNIX O.S. “, PHI Learning
2. Y.Kanetkar “Unix shell programming”, BPB Pub.
3. B.W. Kernighan & R. Pike, “The UNIX Programming Environment”, PHI Learning
4. S.Prata “Advanced UNIX: A Programming's Guide”, BPB Publications, New Delhi.
5. Beck “Linux Kernel, Pearson Education, Asia.
6. Sumitabha Das “ Unix concepts and Applications”.Tata McGraw Hill,Second Edition,2001

IT 7th sem IT 722 High Performance Computing Syllabus RGTU/RGPV Information Technology Syllabus

IT 722 High Performance Computing SYLLABUS 

 RGTU/RGPV High Performance Computing SYLLABUS

Information Technology IT 7th Semester Syllabus,

IT 722 High Performance Computing Course Contents:

Unit I: Introduction to high performance computing: Aim, Architectures, Cluster, Grid, Meta- computing, Middleware, Examples of representative applications. 

Programming models: Parallel programming paradigms, task partitioning and mapping, shared memory, message passing, peer-to-peer, broker-based. Introduction to PVM and MPI.

Unit II: Architecture of cluster-based systems, Issues in cluster design: performance, single-system-image, fault tolerance, manageability, programmability, load balancing, security, storage.
High performance sequential computing: Effects of the memory hierarchy, Out-of-order execution, superscalar processors, Vector processing.

Unit III: Shared-memory processing: Architectures (extensions of the memory hierarchy), Programming paradigms, OpenMP.
Distributed-memory processing: Architectural issues (networks and interconnects), Programming paradigms, MPI (+MPI2).

Unit IV: Grids: Computational grids, Data grids ,Architecture of Grid systems, Grid security infrastructure. Examples of Grids: Globus.
The productivity crisis & future directions: Development overheads, Petaflops programming, New parallel languages: UPC, Titanium, Co-Array FORTRAN.

Unit V: Performance Issues and Techniques: Cost and Frequency Models for I/O, paging, and caching. Notion of Cacheing; temporal and spatial locality models for instruction and data accesses; Intra-process parallelism and pipelining.
Typical Compiler Optimizations of Programs; Improving Performance: Identifying program bottlenecks - profiling, tracing; simple high-level-language optimizations - locality enhancement, memory disambiguation, moving loop-invariants. 

References:-
 Charles Severance, Kevin Dowd, O’reilly, “High Performance Computing”, Second Edition July
1998
 David j. Kuck, “High Performance Computing”, Oxford Univ Pr, 1996
 Gary W. Sabot, “High Performance Computing ”, Addison-Wesley, 1995
 Dowd K, “High Performance Computing”, O' Reilly Series, 1993.
 R.E. Bryant and D. O'Hallaron, “Computer Systems:A Programer's Perspective”, Pearson Education, 2003.

IT 7th sem IT 721 E-Commerce and Governance Syllabus RGTU/RGPV Information Technology Syllabus

IT 721 E-Commerce and Governance SYLLABUS 

 RGTU/RGPV E-Commerce and Governance SYLLABUS

Information Technology IT 7th Semester Syllabus,

 IT 721 E-Commerce and Governance Course Contents:

 Unit I: Introduction to e-commerce: History of e-commerce, e-business models B2B, B2C, C2C, C2B, legal; environment of e-commerce, ethical issues, electronic data interchange, value chain and supply chain, advantages and disadvantages of e-commerce.

Unit II: Electronic Payment Systems: Credit cards, debit cards, smart cards, e-credit accounts, e-money, Marketing on the web, marketing strategies, advertising on the web, customer service and support, introduction to m-commerce, case study: e-commerce in passenger air transport.

Unit III: E-Government, theoretical background of e-governance, issues in e-governance applications, evolution of e-governance, its scope and content, benefits and reasons for the introduction of e-governance, e-governance models- broadcasting, critical flow, comparative analysis, mobilization and lobbying, interactive services / G2C2G.

Unit IV: E-readiness, e-government readiness, E- Framework, step & issues, application of data warehousing and data mining in e-government, Case studies: NICNET-role of nation wide networking in egovernance, e-seva.

Unit V: E-Government systems security: Challenges and approach to e-government security, security concern in e-commerce, security for server computers, communication channel security, security for client computers.

References:-
 Gary P. Schneider, “E-commerce”, Cengage Learning India.
 C.S.R. Prabhu, “E-governence: concept and case study”, PHI Learning Private Limited.
 V. Rajaraman, “Essentials of E-Commerce Technology”, PHI Learning Private Limited.
 David Whiteley, “E-commerce study , technology and applications”, TMH.
 J. Satyanarayan, “E-government: The science of the possible”, PHI Learning Private Limited.
 P.T. Joseph, “E-Commerce An Indian Perspective”, PHI Learning Private Limited.
 Hanson and Kalyanam, “E-Commerce and Web Marketing”, Cengage Learning India.

IT 7th sem IT 720 Embedded System Syllabus RGTU/RGPV Information Technology Syllabus

IT 720 Embedded System SYLLABUS 

 RGTU/RGPV IT 720 Embedded System SYLLABUS

Information Technology IT 7th Semester Syllabus,

IT 720 Embedded System Course Contents:

 Unit I: Introduction to Embedded System, Categories, Requirements, Applications, Challenges and Issues. Core of Embedded system, Memory, Sensors and Actuators, communication interface, Embedded firmware, system components.

Unit II: Fundamental issues of hardware software co-design, computational models in embedded design data flow graph, control flow graph, state machine model, sequential programmed model, concurrent model, unified modeling language.

Unit III: Architecture of 8085 microcontroller, memory organization, registers, interrupts, addressing modes, instruction sets.

Unit IV: Embedded firmware design approaches- OS based, Super loop based. Embedded firmware development languages- Assembly language based, high level language based, mixed. Programming in embedded C.

Unit V: Types of Operating system, Task, process and threads, Multi processing and multi task, Task scheduling, Task communication, Task synchronization.

References:-
 Shibu K V, “Introduction to Embedded System”, TMH.
 David E Simon, “An Embedded Software Primer”, Pearson education Asia, 2001.
 Steven F. Barett, Daniel J. Pack, “Embedded Systems” Pearson education, First Impression 2008.
 Vahid Frank, Tony Givargis, “Embedded System Design”, John Wiley and Sons, Inc.
 Dream Tech Software Team, “Programming for Embedded Systems” Wiley Publishing house Inc.
 Sriram V Iyer, Pankaj Gupta, “Embedded Realtime Systems Programming”, TMH.
 Raj Kamal, “Embedded Systems”, TMH.